PhaseBaum1

java.lang.Object
- phase.PhaseBaum1

```
public class PhaseBaum1
extends java.lang.Object
```
Class PhaseBaum1 implements the forward and backward algorithms for a haploid Li and Stephens hidden Markov model.

Instances of class PhaseBaum1 are not thread-safe.

Constructor Summary

Constructors
Constructor Description

PhaseBaum1(PhaseIbs phaseIbs)
Creates a PhaseLSBaum instance from the specified data.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`nTargSamples()`	Returns the number of target samples.
`void`	`phase(int sample)`	Estimates and stores the phased haplotypes for the specified sample

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - PhaseBaum1
```
public PhaseBaum1(PhaseIbs phaseIbs)
```
    Creates a PhaseLSBaum instance from the specified data.
    
    Parameters:
    
    phaseIbs - the IBS haplotype segments
    
    Throws:
    
    java.lang.NullPointerException - if phaseIBS == null
- Method Detail
  - nTargSamples
```
public int nTargSamples()
```
    Returns the number of target samples.
    
    Returns:
    
    the number of target samples
  - phase
```
public void phase(int sample)
```
    Estimates and stores the phased haplotypes for the specified sample
    
    Parameters:
    
    sample - a sample index
    
    Throws:
    
    java.lang.IndexOutOfBoundsException - if sample < 0 || sample >= this.nTargSamples()