| CompHapSegment |
Class CompHapSegment represents a copied haplotype segment
in a composite reference haplotype.
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| Main |
Class Main is the entry class for the Beagle program.
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| MainHelper |
Class MainHelper is an auxiliary class with methods called by
the main.Main class.
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| Par |
Class Parameters represents the parameters for a Beagle analysis.
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| Pedigree |
Class Pedigree stores parent-offspring relationships
in a list of samples.
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| RunStats |
Class RunStats contains methods for storing and printing
statistics describing a Beagle analysis.
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| WindowWriter |
Class WindowWriter writes VCF and IBD output data.
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